IL_6IP5_254

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUACA*UGUAAUU

Length

13 nucleotides

Bulged bases

6IP5|1|2m|C|532, 6IP5|1|2m|A|555, 6IP5|1|2m|U|556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|A|528
6IP5|1|2m|A|529
6IP5|1|2m|U|530
6IP5|1|2m|A|531
6IP5|1|2m|C|532
6IP5|1|2m|A|533
*
6IP5|1|2m|U|551
6IP5|1|2m|G|552
6IP5|1|2m|U|553
6IP5|1|2m|A|554
6IP5|1|2m|A|555
6IP5|1|2m|U|556
6IP5|1|2m|U|557

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9

Chain 3Q

40S ribosomal protein S30