IL_6IP5_257

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

6IP5|1|2m|C|1215, 6IP5|1|2m|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|C|1213
6IP5|1|2m|A|1214
6IP5|1|2m|C|1215
6IP5|1|2m|C|1216
6IP5|1|2m|A|1217
*
6IP5|1|2m|U|1681
6IP5|1|2m|C|1682
6IP5|1|2m|C|1683
6IP5|1|2m|C|1684
6IP5|1|2m|U|1685
6IP5|1|2m|G|1686

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2r

40S ribosomal protein S5

Chain 2x

40S ribosomal protein S16

Chain 3D

40S ribosomal protein S28

Chain zu

Transfer RNA; tRNA

Chain zv

mRNA

Chain zy

Transfer RNA; tRNA