IL_6IP5_260

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUAGUUACGCGACCCCC*GGCGUCCCCCAACUUCU

Length

35 nucleotides

Bulged bases

6IP5|1|2m|C|1403, 6IP5|1|2m|U|1404, 6IP5|1|2m|C|1416, 6IP5|1|2m|C|1418, 6IP5|1|2m|C|1436, 6IP5|1|2m|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|A|1402
6IP5|1|2m|C|1403
6IP5|1|2m|U|1404
6IP5|1|2m|A|1405
6IP5|1|2m|G|1406
6IP5|1|2m|U|1407
6IP5|1|2m|U|1408
6IP5|1|2m|A|1409
6IP5|1|2m|C|1410
6IP5|1|2m|G|1411
6IP5|1|2m|C|1412
6IP5|1|2m|G|1413
6IP5|1|2m|A|1414
6IP5|1|2m|C|1415
6IP5|1|2m|C|1416
6IP5|1|2m|C|1417
6IP5|1|2m|C|1418
6IP5|1|2m|C|1419
*
6IP5|1|2m|G|1428
6IP5|1|2m|G|1429
6IP5|1|2m|C|1430
6IP5|1|2m|G|1431
6IP5|1|2m|U|1432
6IP5|1|2m|C|1433
6IP5|1|2m|C|1434
6IP5|1|2m|C|1435
6IP5|1|2m|C|1436
6IP5|1|2m|C|1437
6IP5|1|2m|A|1438
6IP5|1|2m|A|1439
6IP5|1|2m|C|1440
6IP5|1|2m|U|1441
6IP5|1|2m|U|1442
6IP5|1|2m|C|1443
6IP5|1|2m|U|1444

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 21

40S ribosomal protein S20

Chain 2p

40S ribosomal protein S3

Chain 2x

40S ribosomal protein S16

Chain 3F

Receptor of activated protein C kinase 1