IL_6IP6_002

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6IP6|1|1A|U|13

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_002 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1567

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6IP6|1|1A|A|12
6IP6|1|1A|U|13
6IP6|1|1A|C|14
*
6IP6|1|1C|G|143
6IP6|1|1C|U|144

Current chains

Chain 1A

28S ribosomal RNA

Chain 1C

5.8S ribosomal RNA

Nearby chains

Chain 2B

60S ribosomal protein L7a

Chain 2H

60S ribosomal protein L15

Chain 2R

60S ribosomal protein L23a