IL_6IP6_007

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

6IP6|1|1A|G|119, 6IP6|1|1A|U|150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|C|118
6IP6|1|1A|G|119
6IP6|1|1A|A|120
6IP6|1|1A|A|121
6IP6|1|1A|U|122
*
6IP6|1|1A|A|147
6IP6|1|1A|C|148
6IP6|1|1A|A|149
6IP6|1|1A|U|150
6IP6|1|1A|G|151
6IP6|1|1A|U|152
6IP6|1|1A|G|153

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2B

60S ribosomal protein L7a

Chain 2H

60S ribosomal protein L15

Chain 2b

60S ribosomal protein L35