IL_6IP6_022

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

6IP6|1|1A|U|687

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|A|466
6IP6|1|1A|U|467
6IP6|1|1A|U|468
6IP6|1|1A|C|469
6IP6|1|1A|A|470
6IP6|1|1A|A|471
6IP6|1|1A|C|472
*
6IP6|1|1A|G|682
6IP6|1|1A|C|683
6IP6|1|1A|G|684
6IP6|1|1A|C|685
6IP6|1|1A|A|686
6IP6|1|1A|U|687
6IP6|1|1A|U|688
6IP6|1|1A|U|689

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2k

60S ribosomal protein L28