IL_6IP6_032

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

6IP6|1|1A|A|932, 6IP6|1|1A|C|934, 6IP6|1|1A|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|A|732
6IP6|1|1A|A|733
6IP6|1|1A|G|734
6IP6|1|1A|G|735
*
6IP6|1|1A|C|928
6IP6|1|1A|A|929
6IP6|1|1A|G|930
6IP6|1|1A|C|931
6IP6|1|1A|A|932
6IP6|1|1A|G|933
6IP6|1|1A|C|934
6IP6|1|1A|A|935
6IP6|1|1A|C|936
6IP6|1|1A|U|937

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2G

60S ribosomal protein L14

Chain 2M

60S ribosomal protein L18a