IL_6IP6_042

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

6IP6|1|1A|G|1266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_042 not in the Motif Atlas

Geometric match to IL_4C7O_004

Geometric discrepancy: 0.3093

The information below is about IL_4C7O_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6IP6|1|1A|G|1244
6IP6|1|1A|C|1245
*
6IP6|1|1A|G|1265
6IP6|1|1A|G|1266
6IP6|1|1A|C|1267

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2V

60S ribosomal protein L29