IL_6IP6_060
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CUCGCAGACCCGACGCCCGCCACG*CG
- Length
- 26 nucleotides
- Bulged bases
- 6IP6|1|1A|A|1699, 6IP6|1|1A|G|1700, 6IP6|1|1A|C|1704, 6IP6|1|1A|G|1708, 6IP6|1|1A|C|1709
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_060 not in the Motif Atlas
- Homologous match to IL_8P9A_264
- Geometric discrepancy: 0.5737
- The information below is about IL_8P9A_264
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25463.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
6IP6|1|1A|C|1694
6IP6|1|1A|U|1695
6IP6|1|1A|C|1696
6IP6|1|1A|G|1697
6IP6|1|1A|C|1698
6IP6|1|1A|A|1699
6IP6|1|1A|G|1700
6IP6|1|1A|A|1701
6IP6|1|1A|C|1702
6IP6|1|1A|C|1703
6IP6|1|1A|C|1704
6IP6|1|1A|G|1705
6IP6|1|1A|A|1706
6IP6|1|1A|C|1707
6IP6|1|1A|G|1708
6IP6|1|1A|C|1709
6IP6|1|1A|C|1714
6IP6|1|1A|C|1715
6IP6|1|1A|G|1716
6IP6|1|1A|C|1717
6IP6|1|1A|C|1718
6IP6|1|1A|A|1719
6IP6|1|1A|C|1720
6IP6|1|1A|G|1721
*
6IP6|1|1A|C|1841
6IP6|1|1A|G|1842
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2A
- 60S ribosomal protein L7
- Chain 2K
- 60S ribosomal protein L18
- Chain 2N
- 60S ribosomal protein L21
- Chain 2V
- 60S ribosomal protein L29
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