IL_6IP6_062
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_062 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.2006
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP6|1|1A|C|1732
6IP6|1|1A|G|1733
6IP6|1|1A|G|1734
6IP6|1|1A|U|1735
6IP6|1|1A|A|1736
6IP6|1|1A|A|1737
*
6IP6|1|1A|U|1792
6IP6|1|1A|A|1793
6IP6|1|1A|A|1794
6IP6|1|1A|A|1795
6IP6|1|1A|U|1796
6IP6|1|1A|G|1797
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 2A
- 60S ribosomal protein L7
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2M
- 60S ribosomal protein L18a
- Chain 2N
- 60S ribosomal protein L21
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