IL_6IP6_074

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

6IP6|1|1A|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|C|1920
6IP6|1|1A|C|1921
6IP6|1|1A|G|1922
*
6IP6|1|1A|C|2062
6IP6|1|1A|G|2063

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2A

60S ribosomal protein L7

Chain 2G

60S ribosomal protein L14

Chain 2M

60S ribosomal protein L18a

Chain 2Z

60S ribosomal protein L35a