IL_6IP6_100

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6IP6|1|1A|U|2880

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|C|2867
6IP6|1|1A|G|2868
6IP6|1|1A|U|2869
6IP6|1|1A|A|2870
6IP6|1|1A|A|2871
6IP6|1|1A|C|2872
*
6IP6|1|1A|G|2877
6IP6|1|1A|G|2878
6IP6|1|1A|A|2879
6IP6|1|1A|U|2880
6IP6|1|1A|A|2881
6IP6|1|1A|A|2882
6IP6|1|1A|G|2883

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 2j

60S ribosomal protein L37a

Chain 2m

Small subunit ribosomal RNA; SSU rRNA