IL_6IP6_109

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_109 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.1075

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6IP6|1|1A|G|3780
6IP6|1|1A|C|3781
*
6IP6|1|1A|G|3811
6IP6|1|1A|C|3812
6IP6|1|1A|A|3813
6IP6|1|1A|U|3814

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 2m

Small subunit ribosomal RNA; SSU rRNA

Chain zy

Transfer RNA; tRNA