IL_6IP6_123

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_123 not in the Motif Atlas

Homologous match to IL_8C3A_112

Geometric discrepancy: 0.1601

The information below is about IL_8C3A_112

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6IP6|1|1A|U|4403
6IP6|1|1A|U|4404
6IP6|1|1A|G|4405
*
6IP6|1|1A|U|4439
6IP6|1|1A|G|4440

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like