IL_6IP6_126

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_126 not in the Motif Atlas

Homologous match to IL_5TBW_107

Geometric discrepancy: 0.172

The information below is about IL_5TBW_107

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6IP6|1|1A|C|4453
6IP6|1|1A|G|4454
*
6IP6|1|1A|U|4526
6IP6|1|1A|G|4527
6IP6|1|1A|G|4528

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain zx

nascent peptide