IL_6IP6_130

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

6IP6|1|1A|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|U|4468
6IP6|1|1A|U|4469
6IP6|1|1A|G|4470
*
6IP6|1|1A|C|4485
6IP6|1|1A|C|4486
6IP6|1|1A|A|4487
6IP6|1|1A|A|4488
6IP6|1|1A|G|4489

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2I

60S ribosomal protein L13a

Chain 2g

Ubiquitin-60S ribosomal protein L40