IL_6IP6_132

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGCCAU*AGGCGGA

Length

13 nucleotides

Bulged bases

6IP6|1|1A|C|4720

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|U|4580
6IP6|1|1A|G|4581
6IP6|1|1A|C|4582
6IP6|1|1A|C|4583
6IP6|1|1A|A|4584
6IP6|1|1A|U|4585
*
6IP6|1|1A|A|4717
6IP6|1|1A|G|4718
6IP6|1|1A|G|4719
6IP6|1|1A|C|4720
6IP6|1|1A|G|4721
6IP6|1|1A|G|4722
6IP6|1|1A|A|4723

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2I

60S ribosomal protein L13a