IL_6IP6_137

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_137 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1519

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6IP6|1|1A|U|4638
6IP6|1|1A|G|4639
6IP6|1|1A|C|4640
*
6IP6|1|1A|G|4659
6IP6|1|1A|G|4660
6IP6|1|1A|G|4661

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2Q

60S ribosomal protein L24

Chain 2X

60S ribosomal protein L31