IL_6IP6_143

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAACG*CUCGCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|G|4891
6IP6|1|1A|A|4892
6IP6|1|1A|A|4893
6IP6|1|1A|A|4894
6IP6|1|1A|C|4895
6IP6|1|1A|G|4896
*
6IP6|1|1A|C|4924
6IP6|1|1A|U|4925
6IP6|1|1A|C|4926
6IP6|1|1A|G|4927
6IP6|1|1A|C|4928
6IP6|1|1A|C|4929

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2G

60S ribosomal protein L14

Chain 2I

60S ribosomal protein L13a