IL_6IP6_148

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUU*AGUCAGC

Length

11 nucleotides

Bulged bases

6IP6|1|1A|G|5049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|G|5000
6IP6|1|1A|U|5001
6IP6|1|1A|U|5002
6IP6|1|1A|U|5003
*
6IP6|1|1A|A|5044
6IP6|1|1A|G|5045
6IP6|1|1A|U|5046
6IP6|1|1A|C|5047
6IP6|1|1A|A|5048
6IP6|1|1A|G|5049
6IP6|1|1A|C|5050

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2Q

60S ribosomal protein L24

Chain 2X

60S ribosomal protein L31