IL_6IP6_150

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCAGAG*CGAUC

Length

11 nucleotides

Bulged bases

6IP6|1|1A|C|5013

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|G|5012
6IP6|1|1A|C|5013
6IP6|1|1A|A|5014
6IP6|1|1A|G|5015
6IP6|1|1A|A|5016
6IP6|1|1A|G|5017
*
6IP6|1|1A|C|5032
6IP6|1|1A|G|5033
6IP6|1|1A|A|5034
6IP6|1|1A|U|5035
6IP6|1|1A|C|5036

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2Q

60S ribosomal protein L24

Chain 2t

40S ribosomal protein S8