IL_6IP6_177
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 6IP6|1|2m|U|368, 6IP6|1|2m|C|369
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_177 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.2888
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37738.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP6|1|2m|U|366
6IP6|1|2m|U|367
6IP6|1|2m|U|368
6IP6|1|2m|C|369
6IP6|1|2m|G|370
6IP6|1|2m|A|371
*
6IP6|1|2m|U|393
6IP6|1|2m|G|394
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2L
- 60S ribosomal protein L19
- Chain 2t
- 40S ribosomal protein S8
- Chain 2v
- 40S ribosomal protein S11
Coloring options: