IL_6IP6_196

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGUUC*GGAACUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|2m|C|879
6IP6|1|2m|G|880
6IP6|1|2m|G|881
6IP6|1|2m|U|882
6IP6|1|2m|U|883
6IP6|1|2m|C|884
*
6IP6|1|2m|G|901
6IP6|1|2m|G|902
6IP6|1|2m|A|903
6IP6|1|2m|A|904
6IP6|1|2m|C|905
6IP6|1|2m|U|906
6IP6|1|2m|G|907

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2v

40S ribosomal protein S11