IL_6IP6_199

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_199 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.337

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6IP6|1|2m|C|927
6IP6|1|2m|G|928
6IP6|1|2m|G|929
6IP6|1|2m|C|930
6IP6|1|2m|C|931
*
6IP6|1|2m|G|1010
6IP6|1|2m|A|1011
6IP6|1|2m|A|1012
6IP6|1|2m|U|1013
6IP6|1|2m|G|1014

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2o

40S ribosomal protein S3a

Chain 3K

40S ribosomal protein S13

Chain 3P

40S ribosomal protein S27