IL_6IP6_208

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_208 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.2746

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6IP6|1|2m|G|1108
6IP6|1|2m|C|1109
6IP6|1|2m|G|1110
*
6IP6|1|2m|C|1123
6IP6|1|2m|C|1124

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2n

40S ribosomal protein SA

Chain 2o

40S ribosomal protein S3a

Chain 2y

40S ribosomal protein S17

Chain 3P

40S ribosomal protein S27