IL_6IP6_209

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGGAGUAUGG*CUGAAACU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|2m|G|1167
6IP6|1|2m|G|1168
6IP6|1|2m|G|1169
6IP6|1|2m|A|1170
6IP6|1|2m|G|1171
6IP6|1|2m|U|1172
6IP6|1|2m|A|1173
6IP6|1|2m|U|1174
6IP6|1|2m|G|1175
6IP6|1|2m|G|1176
*
6IP6|1|2m|C|1185
6IP6|1|2m|U|1186
6IP6|1|2m|G|1187
6IP6|1|2m|A|1188
6IP6|1|2m|A|1189
6IP6|1|2m|A|1190
6IP6|1|2m|C|1191
6IP6|1|2m|U|1192

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

60S ribosomal protein L41

Chain 3B

40S ribosomal protein S23