IL_6IP6_212

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6IP6|1|2m|C|1215, 6IP6|1|2m|C|1216

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_212 not in the Motif Atlas

Geometric match to IL_1KOG_007

Geometric discrepancy: 0.2355

The information below is about IL_1KOG_007

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

6IP6|1|2m|A|1214
6IP6|1|2m|C|1215
6IP6|1|2m|C|1216
6IP6|1|2m|A|1217
*
6IP6|1|2m|U|1681
6IP6|1|2m|C|1682
6IP6|1|2m|C|1683
6IP6|1|2m|C|1684
6IP6|1|2m|U|1685

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2r

40S ribosomal protein S5

Chain 2x

40S ribosomal protein S16

Chain 3D

40S ribosomal protein S28

Chain zv

mRNA

Chain zy

Transfer RNA; tRNA