IL_6IP6_225

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_225 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.1712

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6IP6|1|2m|A|1537
6IP6|1|2m|C|1538
6IP6|1|2m|U|1539
*
6IP6|1|2m|A|1594
6IP6|1|2m|U|1595
6IP6|1|2m|U|1596

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 2r

40S ribosomal protein S5

Chain 2x

40S ribosomal protein S16

Chain 2z

40S ribosomal protein S18

Chain 3O

40S ribosomal protein S25