IL_6IP6_228

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_228 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1367

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6IP6|1|2m|G|1604
6IP6|1|2m|G|1605
6IP6|1|2m|G|1606
6IP6|1|2m|A|1607
6IP6|1|2m|U|1608
6IP6|1|2m|C|1609
6IP6|1|2m|G|1610
*
6IP6|1|2m|C|1629
6IP6|1|2m|A|1630
6IP6|1|2m|U|1631
6IP6|1|2m|G|1632
6IP6|1|2m|A|1633
6IP6|1|2m|A|1634
6IP6|1|2m|C|1635

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 2z

40S ribosomal protein S18