IL_6IP6_243

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAGC*GUAC

Length

8 nucleotides

Bulged bases

6IP6|1|zz|A|136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|zz|G|135
6IP6|1|zz|A|136
6IP6|1|zz|G|137
6IP6|1|zz|C|138
*
6IP6|1|zz|G|286
6IP6|1|zz|U|287
6IP6|1|zz|A|288
6IP6|1|zz|C|289

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 2m

Small subunit ribosomal RNA; SSU rRNA