IL_6IP6_246

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|zz|C|255
6IP6|1|zz|G|256
6IP6|1|zz|A|257
6IP6|1|zz|G|258
6IP6|1|zz|U|259
6IP6|1|zz|A|260
6IP6|1|zz|G|261
*
6IP6|1|zz|C|272
6IP6|1|zz|G|273
6IP6|1|zz|A|274
6IP6|1|zz|A|275
6IP6|1|zz|A|276
6IP6|1|zz|G|277

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 2m

Small subunit ribosomal RNA; SSU rRNA