IL_6IP6_248

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

6IP6|1|1A|G|1359, 6IP6|1|1A|C|1378

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|C|1357
6IP6|1|1A|G|1358
6IP6|1|1A|G|1359
6IP6|1|1A|G|1360
6IP6|1|1A|G|1361
*
6IP6|1|1A|C|1376
6IP6|1|1A|G|1377
6IP6|1|1A|C|1378
6IP6|1|1A|C|1379
6IP6|1|1A|G|1380
6IP6|1|1A|U|1381
6IP6|1|1A|G|1382

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15

Chain 2U

60S ribosomal protein L27a