IL_6IP6_249

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UAUAGACAGCAG*CUGCCGAA

Length

20 nucleotides

Bulged bases

6IP6|1|1A|A|1960

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|U|1957
6IP6|1|1A|A|1958
6IP6|1|1A|U|1959
6IP6|1|1A|A|1960
6IP6|1|1A|G|1961
6IP6|1|1A|A|1962
6IP6|1|1A|C|1963
6IP6|1|1A|A|1964
6IP6|1|1A|G|1965
6IP6|1|1A|C|1966
6IP6|1|1A|A|1967
6IP6|1|1A|G|1968
*
6IP6|1|1A|C|2019
6IP6|1|1A|U|2020
6IP6|1|1A|G|2021
6IP6|1|1A|C|2022
6IP6|1|1A|C|2023
6IP6|1|1A|G|2024
6IP6|1|1A|A|2025
6IP6|1|1A|A|2026

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2g

Ubiquitin-60S ribosomal protein L40