IL_6IP6_252

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

6IP6|1|1A|A|3746, 6IP6|1|1A|A|3747

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_252 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

6IP6|1|1A|U|3704
6IP6|1|1A|G|3705
6IP6|1|1A|C|3706
*
6IP6|1|1A|G|3744
6IP6|1|1A|U|3745
6IP6|1|1A|A|3746
6IP6|1|1A|A|3747
6IP6|1|1A|A|3748

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2m

Small subunit ribosomal RNA; SSU rRNA