IL_6IP6_256

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUAUGGUUC*GAACGUC

Length

17 nucleotides

Bulged bases

6IP6|1|2m|G|113, 6IP6|1|2m|G|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|2m|G|108
6IP6|1|2m|U|109
6IP6|1|2m|U|110
6IP6|1|2m|A|111
6IP6|1|2m|U|112
6IP6|1|2m|G|113
6IP6|1|2m|G|114
6IP6|1|2m|U|115
6IP6|1|2m|U|116
6IP6|1|2m|C|117
*
6IP6|1|2m|G|347
6IP6|1|2m|A|348
6IP6|1|2m|A|349
6IP6|1|2m|C|350
6IP6|1|2m|G|351
6IP6|1|2m|U|352
6IP6|1|2m|C|353

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11