IL_6IP6_260

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGACAGGAUUGACAG*CUUUCUCGAUUCCG

Length

30 nucleotides

Bulged bases

6IP6|1|2m|A|1282, 6IP6|1|2m|C|1283, 6IP6|1|2m|G|1285, 6IP6|1|2m|A|1293, 6IP6|1|2m|U|1306, 6IP6|1|2m|U|1314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|2m|C|1279
6IP6|1|2m|G|1280
6IP6|1|2m|G|1281
6IP6|1|2m|A|1282
6IP6|1|2m|C|1283
6IP6|1|2m|A|1284
6IP6|1|2m|G|1285
6IP6|1|2m|G|1286
6IP6|1|2m|A|1287
6IP6|1|2m|U|1288
6IP6|1|2m|U|1289
6IP6|1|2m|G|1290
6IP6|1|2m|A|1291
6IP6|1|2m|C|1292
6IP6|1|2m|A|1293
6IP6|1|2m|G|1294
*
6IP6|1|2m|C|1305
6IP6|1|2m|U|1306
6IP6|1|2m|U|1307
6IP6|1|2m|U|1308
6IP6|1|2m|C|1309
6IP6|1|2m|U|1310
6IP6|1|2m|C|1311
6IP6|1|2m|G|1312
6IP6|1|2m|A|1313
6IP6|1|2m|U|1314
6IP6|1|2m|U|1315
6IP6|1|2m|C|1316
6IP6|1|2m|C|1317
6IP6|1|2m|G|1318

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2u

40S ribosomal protein S10

Chain 2w

40S ribosomal protein S15

Chain 3E

40S ribosomal protein S29

Chain 3J

40S ribosomal protein S12

Chain 3R

Ubiquitin-40S ribosomal protein S27a