IL_6IP6_263

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

ACUAGUUACGCGACCCCC*GGCGUCCCCCAACUUCUU

Length

36 nucleotides

Bulged bases

6IP6|1|2m|C|1403, 6IP6|1|2m|U|1404, 6IP6|1|2m|C|1416, 6IP6|1|2m|C|1418, 6IP6|1|2m|C|1436, 6IP6|1|2m|C|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|2m|A|1402
6IP6|1|2m|C|1403
6IP6|1|2m|U|1404
6IP6|1|2m|A|1405
6IP6|1|2m|G|1406
6IP6|1|2m|U|1407
6IP6|1|2m|U|1408
6IP6|1|2m|A|1409
6IP6|1|2m|C|1410
6IP6|1|2m|G|1411
6IP6|1|2m|C|1412
6IP6|1|2m|G|1413
6IP6|1|2m|A|1414
6IP6|1|2m|C|1415
6IP6|1|2m|C|1416
6IP6|1|2m|C|1417
6IP6|1|2m|C|1418
6IP6|1|2m|C|1419
*
6IP6|1|2m|G|1428
6IP6|1|2m|G|1429
6IP6|1|2m|C|1430
6IP6|1|2m|G|1431
6IP6|1|2m|U|1432
6IP6|1|2m|C|1433
6IP6|1|2m|C|1434
6IP6|1|2m|C|1435
6IP6|1|2m|C|1436
6IP6|1|2m|C|1437
6IP6|1|2m|A|1438
6IP6|1|2m|A|1439
6IP6|1|2m|C|1440
6IP6|1|2m|U|1441
6IP6|1|2m|U|1442
6IP6|1|2m|C|1443
6IP6|1|2m|U|1444
6IP6|1|2m|U|1445

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 21

40S ribosomal protein S20

Chain 2p

40S ribosomal protein S3

Chain 2x

40S ribosomal protein S16

Chain 3F

Receptor of activated protein C kinase 1