IL_6IP8_017
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUC*GCUAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_017 not in the Motif Atlas
- Geometric match to IL_7MLW_007
- Geometric discrepancy: 0.3169
- The information below is about IL_7MLW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49140.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
6IP8|1|1A|G|443
6IP8|1|1A|G|444
6IP8|1|1A|U|445
6IP8|1|1A|C|446
*
6IP8|1|1A|G|1300
6IP8|1|1A|C|1301
6IP8|1|1A|U|1302
6IP8|1|1A|A|1303
6IP8|1|1A|C|1304
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 2Y
- 60S ribosomal protein L32
- Chain 2Z
- 60S ribosomal protein L35a
Coloring options: