IL_6IP8_023

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6IP8|1|1A|A|667

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_023 not in the Motif Atlas

Geometric match to IL_5J7L_247

Geometric discrepancy: 0.3747

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6IP8|1|1A|G|487
6IP8|1|1A|G|488
*
6IP8|1|1A|C|665
6IP8|1|1A|G|666
6IP8|1|1A|A|667
6IP8|1|1A|C|668
6IP8|1|1A|C|669

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2k

60S ribosomal protein L28