IL_6IP8_024

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGUCGGCG*CCCCGACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|491
6IP8|1|1A|U|492
6IP8|1|1A|G|493
6IP8|1|1A|U|494
6IP8|1|1A|C|495
6IP8|1|1A|G|496
6IP8|1|1A|G|497
6IP8|1|1A|C|498
6IP8|1|1A|G|499
*
6IP8|1|1A|C|655
6IP8|1|1A|C|656
6IP8|1|1A|C|657
6IP8|1|1A|C|658
6IP8|1|1A|G|659
6IP8|1|1A|A|660
6IP8|1|1A|C|661
6IP8|1|1A|C|662

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2K

60S ribosomal protein L18