IL_6IP8_037

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6IP8|1|1A|C|1214, 6IP8|1|1A|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_037 not in the Motif Atlas

Geometric match to IL_4KQ0_001

Geometric discrepancy: 0.3916

The information below is about IL_4KQ0_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6IP8|1|1A|C|1082
6IP8|1|1A|U|1083
6IP8|1|1A|C|1084
*
6IP8|1|1A|G|1213
6IP8|1|1A|C|1214
6IP8|1|1A|C|1215
6IP8|1|1A|C|1216
6IP8|1|1A|G|1217

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2A

60S ribosomal protein L7

Chain 2V

60S ribosomal protein L29