IL_6IP8_077

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

6IP8|1|1A|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_077 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.2347

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6IP8|1|1A|C|2083
6IP8|1|1A|C|2084
6IP8|1|1A|G|2085
*
6IP8|1|1A|C|2272
6IP8|1|1A|G|2273

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2A

60S ribosomal protein L7

Chain 2K

60S ribosomal protein L18

Chain 2Y

60S ribosomal protein L32