IL_6IP8_098

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_098 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.1419

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6IP8|1|1A|G|2889
6IP8|1|1A|C|2890
6IP8|1|1A|U|2891
*
6IP8|1|1A|A|3610
6IP8|1|1A|A|3611
6IP8|1|1A|C|3612

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2m

Small subunit ribosomal RNA; SSU rRNA

Chain 2t

40S ribosomal protein S8