IL_6IP8_104

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

6IP8|1|1A|U|3709, 6IP8|1|1A|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|C|3708
6IP8|1|1A|U|3709
6IP8|1|1A|G|3710
6IP8|1|1A|A|3711
6IP8|1|1A|A|3712
6IP8|1|1A|U|3713
6IP8|1|1A|G|3714
*
6IP8|1|1A|C|3739
6IP8|1|1A|G|3740
6IP8|1|1A|C|3741
6IP8|1|1A|G|3742

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2m

Small subunit ribosomal RNA; SSU rRNA