IL_6IP8_105

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCAAAGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|3714
6IP8|1|1A|U|3715
6IP8|1|1A|C|3716
6IP8|1|1A|A|3717
6IP8|1|1A|A|3718
6IP8|1|1A|A|3719
6IP8|1|1A|G|3720
6IP8|1|1A|U|3721
*
6IP8|1|1A|A|3732
6IP8|1|1A|A|3733
6IP8|1|1A|U|3734
6IP8|1|1A|G|3735
6IP8|1|1A|A|3736
6IP8|1|1A|A|3737
6IP8|1|1A|G|3738
6IP8|1|1A|C|3739

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2c

60S ribosomal protein L36