IL_6IP8_107
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GC*GCAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_107 not in the Motif Atlas
- Geometric match to IL_4V9F_070
- Geometric discrepancy: 0.1366
- The information below is about IL_4V9F_070
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- No text annotation
- Motif group
- IL_24886.2
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 12
Unit IDs
6IP8|1|1A|G|3780
6IP8|1|1A|C|3781
*
6IP8|1|1A|G|3811
6IP8|1|1A|C|3812
6IP8|1|1A|A|3813
6IP8|1|1A|U|3814
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2h
- 60S ribosomal protein L41
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
- Chain zy
- Transfer RNA; tRNA
Coloring options: