IL_6IP8_111

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

6IP8|1|1A|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_111 not in the Motif Atlas

Geometric match to IL_5TBW_093

Geometric discrepancy: 0.1841

The information below is about IL_5TBW_093

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6IP8|1|1A|G|3913
6IP8|1|1A|U|3914
6IP8|1|1A|U|3915
*
6IP8|1|1A|A|4388
6IP8|1|1A|C|4389

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2U

60S ribosomal protein L27a

Chain zx

nascent peptide