IL_6IP8_113

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6IP8|1|1A|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_113 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1554

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6IP8|1|1A|U|3927
6IP8|1|1A|A|3928
6IP8|1|1A|G|3929
*
6IP8|1|1A|U|4181
6IP8|1|1A|G|4182
6IP8|1|1A|G|4183
6IP8|1|1A|G|4184

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2H

60S ribosomal protein L15

Chain 2i

60S ribosomal protein L36a