IL_6IP8_115

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGG*CGUGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|C|4243
6IP8|1|1A|A|4244
6IP8|1|1A|G|4245
6IP8|1|1A|G|4246
*
6IP8|1|1A|C|4263
6IP8|1|1A|G|4264
6IP8|1|1A|U|4265
6IP8|1|1A|G|4266
6IP8|1|1A|G|4267

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1G

60S ribosomal protein L5

Chain 2E

60S ribosomal protein L11

Chain 2N

60S ribosomal protein L21