IL_6IP8_122

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGUGG*CUUUUUG

Length

13 nucleotides

Bulged bases

6IP8|1|1A|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|U|4403
6IP8|1|1A|U|4404
6IP8|1|1A|G|4405
6IP8|1|1A|U|4406
6IP8|1|1A|G|4407
6IP8|1|1A|G|4408
*
6IP8|1|1A|C|4434
6IP8|1|1A|U|4435
6IP8|1|1A|U|4436
6IP8|1|1A|U|4437
6IP8|1|1A|U|4438
6IP8|1|1A|U|4439
6IP8|1|1A|G|4440

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2D

60S ribosomal protein L10-like

Chain zw

Eukaryotic peptide chain release factor subunit 1